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domain annotation interproscan  (InterPro Inc)

 
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    Structured Review

    InterPro Inc domain annotation interproscan
    Domain Annotation Interproscan, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/interproscan+domains/interproscan+annotation/pmc08725406-198-34-44
    Average 90 stars, based on 1 article reviews
    domain annotation interproscan - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    other:

    Article Title: Large-scale analysis of full-length cDNAs from the tomato ( Solanum lycopersicum ) cultivar Micro-Tom, a reference system for the Solanaceae genomics
    Article Snippet: GO annotation documents for InterProScan domains including "interpro2go," "entry.list," and "ParentChildTreeFile.txt" were obtained at the InterPro public ftp site ftp://ftp.ebi.ac.uk/pub/databases/interpro/ in May 2009.

    Functional Assay:

    Article Title: De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae , the Causal Agent of Oat Crown Rust
    Article Snippet: .. Functional annotation used available databases and tools, including PFAM (76), InterPro (77), UniProtKB (78), Merops (79), CAZymes (80), and a set of transcription factors based on InterProScan domains (81) to assign functional annotations (there is a full list at https://github.com/nextgenusfs/funannotate). ..



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    Image Search Results


    Functional annotation summary of P. vera transcriptome

    Journal: BMC Genomics

    Article Title: A genome-wide transcriptome map of pistachio ( Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery

    doi: 10.1186/s12864-017-3989-7

    Figure Lengend Snippet: Functional annotation summary of P. vera transcriptome

    Article Snippet: Based on the number of P. vera transcripts contained in each InterProScan domains/families, the InterPro domains/families ranked and listed the top 30 abundant domains/families in Table .

    Techniques: Functional Assay, Sequencing

    Venn diagram shows the BLAST results of P. vera against five databases, including NR, UniProt, KOG, TAIR10, and InterProScan. The number of transcripts with significant hits is presented in each intersection of the Venn diagram

    Journal: BMC Genomics

    Article Title: A genome-wide transcriptome map of pistachio ( Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery

    doi: 10.1186/s12864-017-3989-7

    Figure Lengend Snippet: Venn diagram shows the BLAST results of P. vera against five databases, including NR, UniProt, KOG, TAIR10, and InterProScan. The number of transcripts with significant hits is presented in each intersection of the Venn diagram

    Article Snippet: Based on the number of P. vera transcripts contained in each InterProScan domains/families, the InterPro domains/families ranked and listed the top 30 abundant domains/families in Table .

    Techniques: